Homer de novo Motif Results (/Users/shansabri/Dropbox/ErnstLab/decon-proj/output/organoid-hg19/final_tracks/integrated/peaks/broad/all-c1-peaks/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
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More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 28585
Total background sequences = 28321
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 T G C A A G T C C G T A C A G T G T A C C G A T A C T G A T C G G A C T G C T A 1e-86-2.000e+0215.05%11.19%54.3bp (57.0bp)TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer(0.956)
More Information | Similar Motifs Found		motif file (matrix)
2 T C G A A C G T C A T G T G C A T A G C A G C T T G A C C G T A A G T C G T A C 1e-81-1.882e+026.57%4.13%55.3bp (56.2bp)Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer(0.977)
More Information | Similar Motifs Found		motif file (matrix)
3 T C G A A T C G T A C G T A C G C A T G C T G A C G A T G C A T 1e-79-1.823e+0251.32%45.74%55.8bp (56.6bp)RELB/MA1117.1/Jaspar(0.777)
More Information | Similar Motifs Found		motif file (matrix)
4 C G T A G T A C C G A T A C T G C G A T A G T C C G T A C T A G 1e-73-1.684e+0234.04%29.09%55.7bp (57.3bp)Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer(0.882)
More Information | Similar Motifs Found		motif file (matrix)
5 T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T 1e-73-1.684e+0249.25%43.90%55.5bp (57.9bp)Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer(0.701)
More Information | Similar Motifs Found		motif file (matrix)
6 C T A G A C G T A C G T C A T G A G T C A G T C C G T A A C G T C T A G C T A G G T C A C G T A 1e-55-1.284e+020.69%0.18%55.2bp (53.8bp)X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.924)
More Information | Similar Motifs Found		motif file (matrix)
7 C T G A A G T C A C G T A C G T A G T C A G T C A C T G T A C G 1e-50-1.152e+024.90%3.23%57.5bp (54.3bp)ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer(0.980)
More Information | Similar Motifs Found		motif file (matrix)
8 A G T C A G C T A C T G A G T C A C G T C G T A A G C T A C G T A C G T C G T A 1e-47-1.088e+0259.79%55.54%55.6bp (57.4bp)PH0032.1_Evx2/Jaspar(0.699)
More Information | Similar Motifs Found		motif file (matrix)
9 A C G T C G A T G C A T A G C T C A G T G C A T A G C T G A T C G T A C G A T C 1e-44-1.019e+0258.12%54.00%55.6bp (56.7bp)PB0192.1_Tcfap2e_2/Jaspar(0.790)
More Information | Similar Motifs Found		motif file (matrix)
10 C G A T G C T A T G C A A C T G C A T G T A G C T A G C A C T G 1e-42-9.695e+0126.38%22.92%56.0bp (58.5bp)Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer(0.626)
More Information | Similar Motifs Found		motif file (matrix)
11 C G T A A G T C C T G A C G T A C G T A A C T G C G T A A G T C C G T A A C T G 1e-39-9.066e+0124.78%21.52%55.5bp (56.7bp)SOX10/MA0442.2/Jaspar(0.756)
More Information | Similar Motifs Found		motif file (matrix)
12 A C T G A C G T A C G T A C T G A C T G A G T C A C T G A C T G A C T G A C T G A C G T A C G T 1e-33-7.757e+0193.94%92.07%55.1bp (57.3bp)PB0164.1_Smad3_2/Jaspar(0.743)
More Information | Similar Motifs Found		motif file (matrix)
13 T A G C C T A G A G C T A C G T G A C T C A T G C G A T G T A C 1e-33-7.708e+0116.48%13.93%56.4bp (59.2bp)NKX2-3/MA0672.1/Jaspar(0.602)
More Information | Similar Motifs Found		motif file (matrix)
14 A C G T A C T G C G A T T A G C T A C G A C G T A G T C C A G T A G T C A G T C A C T G A G T C 1e-32-7.538e+010.10%0.01%45.9bp (0.0bp)CRE(bZIP)/Promoter/Homer(0.591)
More Information | Similar Motifs Found		motif file (matrix)
15 A G T C A C T G A G T C A C G T C T A G A T G C C G T A A C G T A G T C A T G C 1e-31-7.274e+010.16%0.02%50.4bp (24.4bp)PB0091.1_Zbtb3_1/Jaspar(0.638)
More Information | Similar Motifs Found		motif file (matrix)
16 C T G A A C G T C A T G T A G C G C A T G T C A G T C A A C G T C T A G T C A G 1e-30-7.136e+010.91%0.40%54.8bp (59.9bp)Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer(0.815)
More Information | Similar Motifs Found		motif file (matrix)
17 T A C G C T G A A C T G C A G T C G T A G T C A C G A T A T G C C G A T C T A G A C T G A G T C 1e-28-6.640e+010.14%0.01%51.9bp (10.4bp)Hand1::Tcf3/MA0092.1/Jaspar(0.644)
More Information | Similar Motifs Found		motif file (matrix)
18 A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A 1e-27-6.385e+010.12%0.01%46.6bp (62.6bp)PB0135.1_Hoxa3_2/Jaspar(0.650)
More Information | Similar Motifs Found		motif file (matrix)
19 T A C G C G T A T A G C G T A C A C T G A T G C A G C T G A T C T A C G T A C G T G A C C A G T 1e-27-6.385e+010.12%0.01%55.1bp (4.7bp)POL001.1_MTE/Jaspar(0.646)
More Information | Similar Motifs Found		motif file (matrix)
20 C G A T A C T G C G A T A T G C G C A T T C G A C G T A C A T G G A C T A G C T C G T A A C T G 1e-27-6.385e+010.12%0.01%45.6bp (4.3bp)FOXF2/MA0030.1/Jaspar(0.588)
More Information | Similar Motifs Found		motif file (matrix)
21 A C T G G T A C A G T C A C T G A G T C A C T G A C G T C G T A 1e-26-6.135e+0195.71%94.29%56.8bp (60.2bp)PB0199.1_Zfp161_2/Jaspar(0.694)
More Information | Similar Motifs Found		motif file (matrix)
22 T G A C G C T A C G A T C T A G C T A G G T A C C A T G C A G T G T C A G C A T A C G T G C A T 1e-26-6.131e+0148.16%44.98%54.9bp (56.1bp)YY2/MA0748.1/Jaspar(0.582)
More Information | Similar Motifs Found		motif file (matrix)
23 C G T A C G T A C G T A A G T C A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A 1e-26-6.076e+0184.81%82.45%54.8bp (56.2bp)PB0046.1_Mybl1_1/Jaspar(0.730)
More Information | Similar Motifs Found		motif file (matrix)
24 C T A G C T A G C T A G T A C G T A C G T C A G C T A G C T A G 1e-24-5.607e+0116.97%14.77%56.2bp (56.1bp)Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.972)
More Information | Similar Motifs Found		motif file (matrix)
25 T G C A C T G A C A G T C G T A T C A G G A T C G T A C G C T A G A T C A T C G A C G T A C T G 1e-24-5.556e+010.10%0.01%57.8bp (24.7bp)Creb3l2/MA0608.1/Jaspar(0.775)
More Information | Similar Motifs Found		motif file (matrix)
26 T G A C C G T A A C T G A G T C G T A C G C A T T G C A C G T A C A T G G C A T C A G T A C T G 1e-22-5.285e+010.10%0.01%53.5bp (31.0bp)Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer(0.649)
More Information | Similar Motifs Found		motif file (matrix)
27 A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A 1e-22-5.133e+0199.03%98.34%56.1bp (59.4bp)HINFP/MA0131.2/Jaspar(0.662)
More Information | Similar Motifs Found		motif file (matrix)
28 T A G C C A T G A T G C C G T A A G C T A C T G A G T C A T C G G A T C G C T A 1e-22-5.124e+011.63%1.01%54.6bp (62.2bp)NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer(0.915)
More Information | Similar Motifs Found		motif file (matrix)
29 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G 1e-21-5.022e+010.29%0.08%55.2bp (60.0bp)Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.581)
More Information | Similar Motifs Found		motif file (matrix)
30 T A C G T A C G T G C A A T C G G T C A C G T A C G A T C G A T A G C T G C T A 1e-18-4.307e+010.31%0.10%56.2bp (67.1bp)NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer(0.731)
More Information | Similar Motifs Found		motif file (matrix)
31 A C G T C A G T A C T G A G C T A G C T A G T C G C A T C A T G A T C G C A G T C G T A G T A C 1e-16-3.774e+010.20%0.06%53.9bp (60.2bp)PB0121.1_Foxj3_2/Jaspar(0.726)
More Information | Similar Motifs Found		motif file (matrix)
32 A C T G C G T A A T C G A G T C G C A T C G T A A G C T C A G T 1e-15-3.613e+015.01%4.03%57.9bp (56.8bp)Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer(0.659)
More Information | Similar Motifs Found		motif file (matrix)
33 A T G C A C T G A G T C C T A G C G A T C A G T G C A T G A T C 1e-13-3.007e+011.20%0.79%60.6bp (46.4bp)ZBTB33/MA0527.1/Jaspar(0.657)
More Information | Similar Motifs Found		motif file (matrix)
34 A C G T A C T G A C G T A G T C C G T A A C G T A C T G A C G T C G T A C G T A A C T G A C T G 1e-12-2.887e+010.09%0.02%55.6bp (33.2bp)HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer(0.653)
More Information | Similar Motifs Found		motif file (matrix)
35 T G C A T A G C G C A T C A T G T A C G G A T C G A C T A C G T T A G C G T C A C G T A T C G A 1e-12-2.872e+010.19%0.06%57.3bp (51.7bp)CHR(?)/Hela-CellCycle-Expression/Homer(0.648)
More Information | Similar Motifs Found		motif file (matrix)
36 C G T A A G C T A C T G C G T A A G T C A C T G A G C T A G T C 1e-12-2.812e+010.75%0.44%57.6bp (65.0bp)JDP2(var.2)/MA0656.1/Jaspar(0.905)
More Information | Similar Motifs Found		motif file (matrix)
37 C G T A A C T G A C G T A C T G C G A T A C G T C G T A A C T G C G T A G T C A 1e-12-2.768e+010.14%0.04%56.3bp (44.8bp)Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer(0.639)
More Information | Similar Motifs Found		motif file (matrix)
38 * A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T 1e-9-2.275e+010.70%0.43%59.6bp (58.1bp)HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer(0.913)
More Information | Similar Motifs Found		motif file (matrix)
39 * A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G 1e-9-2.099e+012.73%2.19%57.9bp (54.4bp)Sox2/MA0143.3/Jaspar(0.789)
More Information | Similar Motifs Found		motif file (matrix)
40 * T C G A T C G A T C G A C T G A T C A G C G T A C T A G C T A G C T A G T A C G A G C T T A G C 1e-7-1.648e+010.17%0.07%57.5bp (43.2bp)PB0118.1_Esrra_2/Jaspar(0.633)
More Information | Similar Motifs Found		motif file (matrix)
41 * A G T C G C A T A C T G T A C G G T A C T G C A T A G C G C T A C A G T T A G C G C T A A C G T 1e-6-1.567e+010.14%0.06%56.7bp (22.4bp)CREB3/MA0638.1/Jaspar(0.691)
More Information | Similar Motifs Found		motif file (matrix)
42 * A T G C A C T G A C T G G A C T A C G T A G C T T A G C C T A G 1e-6-1.453e+010.63%0.43%56.6bp (44.3bp)IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(0.822)
More Information | Similar Motifs Found		motif file (matrix)
43 * A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T 1e-5-1.372e+010.22%0.12%50.1bp (34.5bp)Hoxa9/MA0594.1/Jaspar(0.596)
More Information | Similar Motifs Found		motif file (matrix)
44 * C G T A T A G C A T G C C T A G C T A G A G C T G C T A C G A T C G T A A G T C 1e-5-1.350e+010.09%0.03%56.2bp (0.0bp)TFCP2/MA0145.3/Jaspar(0.641)
More Information | Similar Motifs Found		motif file (matrix)
45 * A G T C C G T A C G T A A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T 1e-4-1.096e+010.23%0.14%57.5bp (28.3bp)PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer(0.671)
More Information | Similar Motifs Found		motif file (matrix)
46 * A G T C A T G C A G T C C T G A A C T G A C G T C G T A G T C A 1e-4-1.029e+011.49%1.22%59.1bp (49.7bp)Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer(0.674)
More Information | Similar Motifs Found		motif file (matrix)
47 * C G T A A G T C T A C G A C T G G T A C C G T A C T G A A T C G 1e-1-2.506e+001.18%1.10%55.1bp (68.7bp)RUNX2/MA0511.2/Jaspar(0.753)
More Information | Similar Motifs Found		motif file (matrix)