Information for 17-TGATGGAT (Motif 38)

A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A
p-value:1e-9
log p-value:-2.275e+01
Information Content per bp:1.530
Number of Target Sequences with motif201.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif123.1
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets97.1 +/- 59.6bp
Average Position of motif in Background113.0 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TGATGGAT--
TGATKGATGR
 A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TGATGGAT---
ATGATKGATGRC
 A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TGATGGAT--
TTTGATTGATGN
 A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.78
Offset:-7
Orientation:reverse strand
Alignment:-------TGATGGAT--
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TGATGGAT--
TGATTGATGA
 A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TGATGGAT----
NNANTGATTGATNTTN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TGATGGAT----
TGATTRATGGCY
 A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TGATGGAT---
RTGATTKATRGN
 A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:9
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TGATGGAT----
NNANTGATTGATNNNN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:10
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TGATGGAT-
NTNATCGATA
 A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T
G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A