Information for 24-CAAAGCATAAAT (Motif 43)

A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G
p-value:1e-5
log p-value:-1.372e+01
Information Content per bp:1.530
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif32.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets115.4 +/- 50.1bp
Average Position of motif in Background64.5 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAAAGCATAAAT--
---GCCATAAATCA
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAAAGCATAAAT---
--GGCCATAAATCAC
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAAAGCATAAAT--
--NGYCATAAAWCH
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

SOX10/MA0442.2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAAAGCATAAAT
AAAACAAAGAA-----
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAAAGCATAAAT
-AAGCCATAAAA
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAAAGCATAAAT--
--GGCCATAAATCA
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA5/MA0158.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CAAAGCATAAAT-
-----CACTAATT
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAAAGCATAAAT-----
--TATCATAATTAAGGA
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAAAGCATAAAT--
NNTNTCATGAATGT
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAAAGCATAAAT-------
----GTATAAAAGGCGGGG
 A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G