Information for 13-CTAGCAGAGCAG (Motif 29)

G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G
Reverse Opposite:
A G T C G C A T C A T G T A G C C G A T A G T C C G A T T A C G A G T C G C A T G T C A C A T G
p-value:1e-21
log p-value:-5.022e+01
Information Content per bp:1.697
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif22.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets93.1 +/- 55.2bp
Average Position of motif in Background79.6 +/- 60.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTAGCAGAGCAG----
----CACAGCAGGGGG
 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTAGCAGAGCAG----
-GAGCACAGCAGGACA
 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G A C G T A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0199.1_Zfp161_2/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTAGCAGAGCAG
GCCGCGCAGTGCGT
 A C G T A C G T G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTAGCAGAGCAG----
-CCACACAGCAGGAGA
 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G A C G T A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTAGCAGAGCAG------
---DCHCAGCAGGRGGCC
 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTAGCAGAGCAG
----CGGAGC--
 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

POL001.1_MTE/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTAGCAGAGCAG----
TTTCGAGCGGAACGGTCGC
 A C G T A C G T A C G T G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G A C G T A C G T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTAGCAGAGCAG----
-CCACACAGCAGGAGA
 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G A C G T A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CTAGCAGAGCAG
------CAGCC-
 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CTAGCAGAGCAG
CCTGCTGAGH--
 G T A C C A G T C G T A T C A G A T G C C G T A T A C G G C T A A T C G G T A C C G T A T C A G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T