Information for 6-CACTATTAAGGA (Motif 18)

A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A
Reverse Opposite:
A C G T A G T C G A T C C G A T A G C T T C G A C G T A C A G T C G T A A T C G C G A T C T A G
p-value:1e-27
log p-value:-6.385e+01
Information Content per bp:1.847
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets90.4 +/- 46.6bp
Average Position of motif in Background104.1 +/- 62.6bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CACTATTAAGGA
AAAAACCATTAAGG-
 A C G T A C G T A C G T A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CACTATTAAGGA
--CAATTAA---
 A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A
A C G T A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CACTATTAAGGA----
AGTTATTAATGAGGTC
 A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A A C G T A C G T A C G T A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CACTATTAAGGA
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CACTATTAAGGA
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CACTATTAAGGA
TATCATAATTAAGGA
 A C G T A C G T A C G T A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CACTATTAAGGA
-GCAATTAG---
 A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A
A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CACTATTAAGGA
-CTAATTAA---
 A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A
A C G T A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T

PH0039.1_Mnx1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CACTATTAAGGA-
NNNCACTAATTANTNN
 A C G T A C G T A C G T A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

POU4F3/MA0791.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CACTATTAAGGA-
ATGCATAATTAATGAG
 A C G T A C G T A C G T A G T C C G T A A T G C G A C T G C T A C G A T A C G T T C G A C G T A C A T G T A C G G T C A A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G