Information for 19-CCCTTGTG (Motif 39)

A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C C G T A C G T A C T A G C T A G A C T G
p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.880
Number of Target Sequences with motif780.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif619.1
Percentage of Background Sequences with motif2.19%
Average Position of motif in Targets100.3 +/- 57.9bp
Average Position of motif in Background95.8 +/- 54.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCCTTGTG
CCTTTGTT
 A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CCCTTGTG
CCWTTGTY
 A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CCCTTGTG----
NNNCCATTGTGTNAN
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCCTTGTG--
CCWTTGTYYB
 A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G A C G T A C G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTGTG
AGGVNCCTTTGT-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCCTTGTG--
CCTTTGTTTT
 A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G A C G T A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCCTTGTG--
CCATTGTTNY
 A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G A C G T A C G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCCTTGTG-
NCCATTGTTC
 A C G T A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTGTG-
NCCATTGTTY
 A C G T A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

SOX13/MA1120.1/Jaspar

Match Rank:10
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTGTG-
NNCCATTGTNN
 A C G T A C G T A G T C A G T C A G T C A C G T A C G T C T A G A C G T A C T G A C G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T