Information for 12-GCGAACGA (Motif 27)

A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C G T A C G T A G T C A C T G A G T C
p-value:1e-22
log p-value:-5.133e+01
Information Content per bp:1.530
Number of Target Sequences with motif28302.0
Percentage of Target Sequences with motif99.03%
Number of Background Sequences with motif27852.4
Percentage of Background Sequences with motif98.34%
Average Position of motif in Targets99.6 +/- 56.1bp
Average Position of motif in Background100.4 +/- 59.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)5.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCGAACGA--
NCGCGGACGTTG
 A C G T A C G T A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A A C G T A C G T
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCGAACGA--
GCGGACCBWA
 A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A A C G T A C G T
A T C G G T A C A C T G A C T G G T C A A T G C A T G C A T G C G C T A T C G A

PB0044.1_Mtf1_1/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCGAACGA---
NNTTTGCACACGGCCC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

PH0044.1_Homez/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCGAACGA------
NNTAAAAACGATGTTNT
 A C G T A C G T A C G T A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A T C G A C T C G A T T C G A C G T A C G T A G C T A G C T A A G T C C A T G C G T A C G A T A C T G C G A T C G A T C G A T G C A T

RBPJ/MA1116.1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCGAACGA
CCTGGGAAAG-
 A C G T A C G T A C G T A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A
A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G A C G T

PB0094.1_Zfp128_1/Jaspar

Match Rank:6
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GCGAACGA---
TCTTTGGCGTACCCTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A A C G T A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCGAACGA----
--GAACAATGGN
 A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCGAACGA
CSTGGGAAAD-
 A C G T A C G T A C G T A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCGAACGA
CGTGCCAAG--
 A C G T A C G T A C G T A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCGAACGA------
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C T G A G T C A C T G C G T A C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T