Information for 3-AAAGCAAT (Motif 5)

T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T
Reverse Opposite:
T G C A C G A T A G C T A T C G T G A C C G A T C A G T A C G T
p-value:1e-73
log p-value:-1.684e+02
Information Content per bp:1.594
Number of Target Sequences with motif14075.0
Percentage of Target Sequences with motif49.25%
Number of Background Sequences with motif12434.0
Percentage of Background Sequences with motif43.90%
Average Position of motif in Targets100.7 +/- 55.5bp
Average Position of motif in Background100.0 +/- 57.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AAAGCAAT
HNRAATCAAT
 A C G T A C G T T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

PH0006.1_Barhl2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAAGCAAT------
AAAAACCAATTAAGAA
 A C G T A C G T T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

ONECUT3/MA0757.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AAAGCAAT---
AAAAAATCAATAAT
 A C G T A C G T A C G T T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.66
Offset:-8
Orientation:forward strand
Alignment:--------AAAGCAAT
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAAGCAAT
-NAACAAT
 T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T
A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AAAGCAAT---
AAAAAATCGATAAT
 A C G T A C G T A C G T T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T A C G T A C G T A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAAGCAAT---
AAAAAATCGATAAT
 A C G T A C G T A C G T T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAAGCAAT--
TAATCAATTA
 T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T A C G T A C G T
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AAAGCAAT----
NNTNANAACAATTNNA
 A C G T A C G T A C G T A C G T T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T A C G T A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

Hmx1/MA0896.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAAGCAAT--------
ACAAGCAATTAATGAAT
 A C G T T G C A G T C A G C T A A C T G T A G C T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T