Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 28598)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 28300)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-76	-1.750e+02	0.0000	1876.0	6.56%	1188.6	4.20%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-69	-1.607e+02	0.0000	1616.0	5.65%	1006.7	3.55%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-69	-1.593e+02	0.0000	4580.0	16.03%	3526.8	12.45%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-68	-1.567e+02	0.0000	3438.0	12.03%	2531.0	8.94%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-66	-1.525e+02	0.0000	1361.0	4.76%	821.0	2.90%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-65	-1.516e+02	0.0000	1820.0	6.37%	1184.9	4.18%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-62	-1.449e+02	0.0000	2017.0	7.06%	1357.1	4.79%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-62	-1.436e+02	0.0000	2522.0	8.82%	1780.7	6.29%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-61	-1.422e+02	0.0000	1547.0	5.41%	982.8	3.47%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-61	-1.407e+02	0.0000	4943.0	17.30%	3910.4	13.81%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-60	-1.390e+02	0.0000	5581.0	19.53%	4494.9	15.87%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-58	-1.336e+02	0.0000	4516.0	15.80%	3550.6	12.54%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-56	-1.298e+02	0.0000	4405.0	15.41%	3463.3	12.23%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-51	-1.179e+02	0.0000	710.0	2.48%	378.1	1.34%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-47	-1.105e+02	0.0000	950.0	3.32%	566.6	2.00%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-47	-1.090e+02	0.0000	8386.0	29.34%	7233.0	25.54%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-45	-1.041e+02	0.0000	383.0	1.34%	167.8	0.59%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-44	-1.032e+02	0.0000	2165.0	7.58%	1575.5	5.56%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-44	-1.016e+02	0.0000	8926.0	31.23%	7784.7	27.49%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-43	-1.013e+02	0.0000	3790.0	13.26%	3009.9	10.63%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-41	-9.635e+01	0.0000	407.0	1.42%	190.0	0.67%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-41	-9.493e+01	0.0000	1246.0	4.36%	826.4	2.92%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-38	-8.977e+01	0.0000	1808.0	6.33%	1305.1	4.61%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-37	-8.726e+01	0.0000	2873.0	10.05%	2239.0	7.91%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-36	-8.381e+01	0.0000	1887.0	6.60%	1389.0	4.90%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-34	-7.905e+01	0.0000	3231.0	11.31%	2588.1	9.14%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-34	-7.878e+01	0.0000	4829.0	16.90%	4048.3	14.29%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-34	-7.874e+01	0.0000	12564.0	43.96%	11437.7	40.38%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-34	-7.864e+01	0.0000	635.0	2.22%	372.5	1.32%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-33	-7.825e+01	0.0000	7775.0	27.20%	6816.3	24.07%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-33	-7.817e+01	0.0000	3009.0	10.53%	2392.3	8.45%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-32	-7.586e+01	0.0000	2823.0	9.88%	2234.3	7.89%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-32	-7.486e+01	0.0000	2190.0	7.66%	1677.6	5.92%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-32	-7.480e+01	0.0000	3739.0	13.08%	3065.7	10.82%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-32	-7.427e+01	0.0000	2372.0	8.30%	1839.0	6.49%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-32	-7.379e+01	0.0000	2490.0	8.71%	1945.5	6.87%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-31	-7.286e+01	0.0000	4168.0	14.58%	3466.6	12.24%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-31	-7.234e+01	0.0000	4386.0	15.35%	3669.6	12.96%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-30	-7.090e+01	0.0000	2903.0	10.16%	2324.2	8.21%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-30	-7.046e+01	0.0000	547.0	1.91%	317.0	1.12%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-30	-6.989e+01	0.0000	11494.0	40.22%	10452.1	36.90%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-29	-6.784e+01	0.0000	3600.0	12.60%	2968.3	10.48%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-28	-6.668e+01	0.0000	3019.0	10.56%	2445.4	8.63%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-28	-6.523e+01	0.0000	855.0	2.99%	567.6	2.00%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-28	-6.468e+01	0.0000	4341.0	15.19%	3664.1	12.94%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-26	-6.187e+01	0.0000	386.0	1.35%	209.1	0.74%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-26	-6.127e+01	0.0000	5353.0	18.73%	4625.6	16.33%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-26	-6.124e+01	0.0000	11132.0	38.95%	10161.3	35.88%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-26	-6.021e+01	0.0000	4183.0	14.64%	3540.8	12.50%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-25	-5.974e+01	0.0000	2782.0	9.73%	2260.0	7.98%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-25	-5.860e+01	0.0000	2154.0	7.54%	1701.0	6.01%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-24	-5.667e+01	0.0000	3769.0	13.19%	3175.5	11.21%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-24	-5.643e+01	0.0000	1470.0	5.14%	1106.4	3.91%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-23	-5.364e+01	0.0000	7099.0	24.84%	6325.3	22.33%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-23	-5.317e+01	0.0000	2099.0	7.34%	1671.6	5.90%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-22	-5.246e+01	0.0000	193.0	0.68%	85.1	0.30%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-22	-5.079e+01	0.0000	5726.0	20.03%	5039.4	17.79%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-21	-4.901e+01	0.0000	1627.0	5.69%	1267.4	4.47%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-20	-4.804e+01	0.0000	6095.0	21.33%	5407.6	19.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-20	-4.758e+01	0.0000	243.0	0.85%	123.2	0.43%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-20	-4.663e+01	0.0000	3662.0	12.81%	3128.5	11.05%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-20	-4.620e+01	0.0000	1889.0	6.61%	1510.9	5.33%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-19	-4.601e+01	0.0000	1992.0	6.97%	1603.2	5.66%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-19	-4.517e+01	0.0000	1823.0	6.38%	1455.9	5.14%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-19	-4.391e+01	0.0000	6834.0	23.91%	6141.1	21.68%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-18	-4.354e+01	0.0000	276.0	0.97%	151.5	0.53%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-18	-4.313e+01	0.0000	4993.0	17.47%	4396.2	15.52%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-18	-4.278e+01	0.0000	1865.0	6.53%	1502.5	5.31%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-17	-4.076e+01	0.0000	2969.0	10.39%	2518.9	8.89%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-17	-3.975e+01	0.0000	2368.0	8.29%	1972.0	6.96%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-17	-3.961e+01	0.0000	6738.0	23.58%	6082.5	21.48%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-17	-3.961e+01	0.0000	4896.0	17.13%	4328.4	15.28%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-17	-3.951e+01	0.0000	2278.0	7.97%	1890.8	6.68%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-16	-3.874e+01	0.0000	3805.0	13.31%	3307.9	11.68%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-16	-3.864e+01	0.0000	181.0	0.63%	89.5	0.32%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-15	-3.591e+01	0.0000	1963.0	6.87%	1620.5	5.72%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-15	-3.485e+01	0.0000	3150.0	11.02%	2719.0	9.60%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-15	-3.474e+01	0.0000	3618.0	12.66%	3157.9	11.15%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-15	-3.458e+01	0.0000	3058.0	10.70%	2635.4	9.30%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-15	-3.456e+01	0.0000	3881.0	13.58%	3405.4	12.02%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-14	-3.453e+01	0.0000	1278.0	4.47%	1011.0	3.57%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-14	-3.314e+01	0.0000	4028.0	14.09%	3553.5	12.55%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-14	-3.305e+01	0.0000	694.0	2.43%	506.5	1.79%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-14	-3.301e+01	0.0000	2110.0	7.38%	1768.2	6.24%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-14	-3.293e+01	0.0000	184.0	0.64%	97.3	0.34%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-14	-3.242e+01	0.0000	1188.0	4.16%	938.5	3.31%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-14	-3.234e+01	0.0000	4808.0	16.82%	4297.4	15.17%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-13	-3.186e+01	0.0000	906.0	3.17%	692.3	2.44%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-13	-3.161e+01	0.0000	2559.0	8.95%	2189.8	7.73%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-13	-3.148e+01	0.0000	773.0	2.70%	578.3	2.04%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-13	-3.118e+01	0.0000	7245.0	25.35%	6641.9	23.45%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-13	-3.105e+01	0.0000	147.0	0.51%	73.8	0.26%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-13	-3.079e+01	0.0000	1083.0	3.79%	851.5	3.01%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-13	-3.068e+01	0.0000	5138.0	17.98%	4624.8	16.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-13	-3.047e+01	0.0000	4735.0	16.57%	4242.6	14.98%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-13	-3.017e+01	0.0000	1239.0	4.34%	992.3	3.50%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-13	-3.015e+01	0.0000	2836.0	9.92%	2455.4	8.67%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-12	-2.993e+01	0.0000	3021.0	10.57%	2629.8	9.29%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-12	-2.985e+01	0.0000	579.0	2.03%	417.9	1.48%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-12	-2.938e+01	0.0000	600.0	2.10%	436.6	1.54%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-12	-2.928e+01	0.0000	770.0	2.69%	582.6	2.06%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-12	-2.922e+01	0.0000	7314.0	25.59%	6726.3	23.75%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-12	-2.920e+01	0.0000	4633.0	16.21%	4155.2	14.67%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-12	-2.920e+01	0.0000	1593.0	5.57%	1315.7	4.65%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-12	-2.910e+01	0.0000	3953.0	13.83%	3511.7	12.40%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-12	-2.904e+01	0.0000	3419.0	11.96%	3008.7	10.62%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-12	-2.877e+01	0.0000	1264.0	4.42%	1020.4	3.60%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-12	-2.865e+01	0.0000	4419.0	15.46%	3956.9	13.97%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-12	-2.855e+01	0.0000	588.0	2.06%	428.6	1.51%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-12	-2.796e+01	0.0000	5104.0	17.86%	4614.8	16.29%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-12	-2.774e+01	0.0000	694.0	2.43%	521.0	1.84%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-12	-2.768e+01	0.0000	1319.0	4.62%	1074.3	3.79%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-12	-2.764e+01	0.0000	2727.0	9.54%	2369.8	8.37%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-11	-2.743e+01	0.0000	2052.0	7.18%	1744.4	6.16%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-11	-2.690e+01	0.0000	2633.0	9.21%	2286.3	8.07%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-11	-2.676e+01	0.0000	679.0	2.38%	511.9	1.81%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-11	-2.669e+01	0.0000	3939.0	13.78%	3516.1	12.41%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-11	-2.651e+01	0.0000	2625.0	9.18%	2281.3	8.05%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-11	-2.607e+01	0.0000	643.0	2.25%	482.7	1.70%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-11	-2.590e+01	0.0000	1637.0	5.73%	1371.3	4.84%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-11	-2.588e+01	0.0000	2826.0	9.89%	2474.0	8.74%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-11	-2.568e+01	0.0000	310.0	1.08%	204.0	0.72%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-11	-2.555e+01	0.0000	2086.0	7.30%	1786.9	6.31%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-10	-2.526e+01	0.0000	3384.0	11.84%	3002.3	10.60%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-10	-2.503e+01	0.0000	1183.0	4.14%	963.7	3.40%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-10	-2.490e+01	0.0000	4120.0	14.42%	3702.3	13.07%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-10	-2.480e+01	0.0000	254.0	0.89%	161.7	0.57%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-10	-2.433e+01	0.0000	403.0	1.41%	283.3	1.00%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-10	-2.392e+01	0.0000	581.0	2.03%	435.6	1.54%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-10	-2.387e+01	0.0000	2461.0	8.61%	2145.6	7.58%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-10	-2.344e+01	0.0000	1246.0	4.36%	1027.8	3.63%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-10	-2.341e+01	0.0000	2538.0	8.88%	2220.4	7.84%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-9	-2.286e+01	0.0000	706.0	2.47%	547.5	1.93%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-9	-2.273e+01	0.0000	638.0	2.23%	488.2	1.72%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-9	-2.238e+01	0.0000	1946.0	6.81%	1675.8	5.92%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-9	-2.208e+01	0.0000	1351.0	4.73%	1129.1	3.99%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-9	-2.173e+01	0.0000	697.0	2.44%	543.5	1.92%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-9	-2.144e+01	0.0000	930.0	3.25%	751.8	2.65%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-9	-2.140e+01	0.0000	7028.0	24.59%	6530.1	23.06%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-9	-2.131e+01	0.0000	5019.0	17.56%	4593.7	16.22%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-8	-2.072e+01	0.0000	1224.0	4.28%	1020.3	3.60%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-8	-2.063e+01	0.0000	3161.0	11.06%	2827.2	9.98%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-8	-2.052e+01	0.0000	3234.0	11.32%	2897.9	10.23%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-8	-1.981e+01	0.0000	496.0	1.74%	374.2	1.32%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-8	-1.977e+01	0.0000	1951.0	6.83%	1696.3	5.99%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-8	-1.960e+01	0.0000	3950.0	13.82%	3586.7	12.66%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-8	-1.920e+01	0.0000	1376.0	4.81%	1167.5	4.12%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-8	-1.889e+01	0.0000	2307.0	8.07%	2035.6	7.19%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-8	-1.876e+01	0.0000	158.0	0.55%	96.9	0.34%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-7	-1.808e+01	0.0000	571.0	2.00%	445.1	1.57%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-7	-1.794e+01	0.0000	592.0	2.07%	464.1	1.64%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-7	-1.779e+01	0.0000	9457.0	33.09%	8941.1	31.57%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-7	-1.759e+01	0.0000	3615.0	12.65%	3285.7	11.60%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-7	-1.723e+01	0.0000	474.0	1.66%	363.8	1.28%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-7	-1.705e+01	0.0000	3890.0	13.61%	3553.1	12.55%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-7	-1.689e+01	0.0000	848.0	2.97%	697.1	2.46%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-7	-1.687e+01	0.0000	202.0	0.71%	134.7	0.48%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-7	-1.683e+01	0.0000	2367.0	8.28%	2107.3	7.44%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-7	-1.683e+01	0.0000	2602.0	9.10%	2329.2	8.22%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-7	-1.669e+01	0.0000	302.0	1.06%	217.1	0.77%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-7	-1.626e+01	0.0000	1416.0	4.95%	1221.3	4.31%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-6	-1.609e+01	0.0000	636.0	2.23%	510.1	1.80%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-6	-1.603e+01	0.0000	4419.0	15.46%	4071.2	14.37%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-6	-1.602e+01	0.0000	1652.0	5.78%	1442.4	5.09%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-6	-1.590e+01	0.0000	2598.0	9.09%	2333.5	8.24%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-6	-1.573e+01	0.0000	1379.0	4.83%	1190.7	4.20%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.567e+01	0.0000	1703.0	5.96%	1492.6	5.27%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-6	-1.567e+01	0.0000	1750.0	6.12%	1536.3	5.42%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-6	-1.558e+01	0.0000	520.0	1.82%	409.0	1.44%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-6	-1.521e+01	0.0000	2425.0	8.48%	2175.1	7.68%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-6	-1.504e+01	0.0000	2213.0	7.74%	1976.4	6.98%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-6	-1.490e+01	0.0000	1526.0	5.34%	1332.7	4.71%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-6	-1.489e+01	0.0000	944.0	3.30%	794.9	2.81%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-6	-1.451e+01	0.0000	1361.0	4.76%	1181.4	4.17%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-6	-1.449e+01	0.0000	5595.0	19.58%	5224.4	18.45%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-6	-1.447e+01	0.0000	315.0	1.10%	234.3	0.83%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-6	-1.427e+01	0.0000	1987.0	6.95%	1769.8	6.25%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-6	-1.425e+01	0.0000	2448.0	8.57%	2206.0	7.79%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-6	-1.422e+01	0.0000	1614.0	5.65%	1419.7	5.01%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-6	-1.399e+01	0.0000	2008.0	7.03%	1791.7	6.33%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-6	-1.399e+01	0.0000	2864.0	10.02%	2604.0	9.19%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-6	-1.398e+01	0.0000	1974.0	6.91%	1759.4	6.21%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-6	-1.391e+01	0.0000	1164.0	4.07%	1002.4	3.54%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-5	-1.375e+01	0.0000	1652.0	5.78%	1458.0	5.15%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-5	-1.374e+01	0.0000	1767.0	6.18%	1566.1	5.53%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-5	-1.348e+01	0.0000	6754.0	23.63%	6363.6	22.47%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-5	-1.328e+01	0.0000	3154.0	11.04%	2887.3	10.19%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-5	-1.320e+01	0.0000	2749.0	9.62%	2501.1	8.83%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-5	-1.299e+01	0.0000	628.0	2.20%	516.5	1.82%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-5	-1.287e+01	0.0000	328.0	1.15%	250.2	0.88%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-5	-1.270e+01	0.0000	531.0	1.86%	430.3	1.52%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-5	-1.231e+01	0.0000	5228.0	18.29%	4897.3	17.29%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-5	-1.186e+01	0.0000	1051.0	3.68%	910.0	3.21%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-5	-1.179e+01	0.0000	1618.0	5.66%	1441.3	5.09%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-5	-1.173e+01	0.0000	3095.0	10.83%	2847.6	10.05%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-5	-1.166e+01	0.0000	245.0	0.86%	182.5	0.64%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-5	-1.162e+01	0.0000	1489.0	5.21%	1321.1	4.66%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-4	-1.149e+01	0.0000	418.0	1.46%	334.3	1.18%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-4	-1.098e+01	0.0000	364.0	1.27%	288.7	1.02%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-4	-1.085e+01	0.0000	5347.0	18.71%	5033.5	17.77%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-4	-1.083e+01	0.0000	867.0	3.03%	747.0	2.64%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.077e+01	0.0000	1868.0	6.54%	1686.2	5.95%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-1.069e+01	0.0000	1711.0	5.99%	1538.6	5.43%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-1.058e+01	0.0001	5139.0	17.98%	4835.2	17.07%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-4	-1.047e+01	0.0001	2545.0	8.90%	2334.8	8.24%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-4	-1.019e+01	0.0001	295.0	1.03%	230.4	0.81%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-4	-1.004e+01	0.0001	1396.0	4.88%	1246.8	4.40%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-4	-1.000e+01	0.0001	3811.0	13.33%	3557.9	12.56%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-4	-9.902e+00	0.0001	2549.0	8.92%	2344.1	8.28%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-4	-9.650e+00	0.0001	1050.0	3.67%	924.2	3.26%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-4	-9.611e+00	0.0001	806.0	2.82%	697.6	2.46%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-4	-9.561e+00	0.0001	743.0	2.60%	639.2	2.26%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-4	-9.504e+00	0.0001	1949.0	6.82%	1775.9	6.27%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-4	-9.465e+00	0.0002	12.0	0.04%	3.6	0.01%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-4	-9.436e+00	0.0002	292.0	1.02%	230.8	0.82%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-4	-9.305e+00	0.0002	920.0	3.22%	805.6	2.84%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-3	-9.133e+00	0.0002	259.0	0.91%	202.8	0.72%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-8.813e+00	0.0003	2292.0	8.02%	2110.1	7.45%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-8.779e+00	0.0003	1503.0	5.26%	1358.2	4.80%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-3	-8.731e+00	0.0003	1881.0	6.58%	1718.7	6.07%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-3	-8.731e+00	0.0003	1397.0	4.89%	1258.3	4.44%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-3	-8.638e+00	0.0003	1042.0	3.65%	924.1	3.26%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-3	-8.523e+00	0.0004	1471.0	5.15%	1330.1	4.70%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-3	-8.488e+00	0.0004	530.0	1.85%	449.2	1.59%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-3	-8.328e+00	0.0004	5037.0	17.62%	4771.1	16.85%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-3	-8.137e+00	0.0005	6306.0	22.06%	6012.1	21.23%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-3	-8.108e+00	0.0005	2173.0	7.60%	2004.1	7.08%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-8.005e+00	0.0006	1784.0	6.24%	1633.3	5.77%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-3	-7.997e+00	0.0006	910.0	3.18%	805.8	2.85%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-3	-7.927e+00	0.0006	4655.0	16.29%	4406.7	15.56%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-7.922e+00	0.0007	794.0	2.78%	697.8	2.46%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-3	-7.829e+00	0.0007	4902.0	17.15%	4648.5	16.41%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-7.791e+00	0.0007	1950.0	6.82%	1794.8	6.34%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-7.421e+00	0.0011	192.0	0.67%	149.9	0.53%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-3	-7.275e+00	0.0012	196.0	0.69%	153.9	0.54%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-6.781e+00	0.0020	688.0	2.41%	606.8	2.14%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-2	-6.756e+00	0.0020	64.0	0.22%	42.2	0.15%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-2	-6.732e+00	0.0021	3654.0	12.79%	3453.7	12.19%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-2	-6.716e+00	0.0021	291.0	1.02%	240.9	0.85%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-6.715e+00	0.0021	1077.0	3.77%	973.6	3.44%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-2	-6.712e+00	0.0021	2765.0	9.67%	2592.8	9.15%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-6.603e+00	0.0023	2184.0	7.64%	2033.0	7.18%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.399e+00	0.0028	492.0	1.72%	426.3	1.51%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-6.373e+00	0.0029	2554.0	8.94%	2393.2	8.45%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2	-6.304e+00	0.0031	796.0	2.79%	711.9	2.51%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-6.302e+00	0.0031	4932.0	17.26%	4705.6	16.61%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-2	-6.211e+00	0.0034	2809.0	9.83%	2642.1	9.33%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-6.191e+00	0.0034	8998.0	31.48%	8694.8	30.70%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-6.169e+00	0.0035	2150.0	7.52%	2006.7	7.09%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-2	-6.168e+00	0.0035	1266.0	4.43%	1158.3	4.09%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-6.162e+00	0.0035	355.0	1.24%	301.6	1.06%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-2	-6.161e+00	0.0035	852.0	2.98%	765.2	2.70%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.979e+00	0.0041	2001.0	7.00%	1865.9	6.59%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-2	-5.911e+00	0.0044	2338.0	8.18%	2191.0	7.74%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-5.808e+00	0.0049	1352.0	4.73%	1245.0	4.40%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.709e+00	0.0054	528.0	1.85%	464.5	1.64%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-5.622e+00	0.0058	1217.0	4.26%	1117.7	3.95%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.568e+00	0.0061	1056.0	3.69%	964.4	3.40%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-5.340e+00	0.0077	1063.0	3.72%	973.7	3.44%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-5.307e+00	0.0079	624.0	2.18%	557.9	1.97%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-5.286e+00	0.0080	7580.0	26.52%	7322.4	25.85%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-5.264e+00	0.0082	223.0	0.78%	185.7	0.66%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.230e+00	0.0084	155.0	0.54%	125.0	0.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-2	-5.207e+00	0.0086	673.0	2.35%	604.3	2.13%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-2	-5.054e+00	0.0100	1472.0	5.15%	1368.4	4.83%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-4.979e+00	0.0107	26.0	0.09%	15.8	0.06%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-4.915e+00	0.0114	1466.0	5.13%	1364.5	4.82%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-4.812e+00	0.0126	1245.0	4.36%	1154.0	4.07%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-4.791e+00	0.0128	27.0	0.09%	16.0	0.06%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-2	-4.779e+00	0.0129	2032.0	7.11%	1912.5	6.75%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-2	-4.733e+00	0.0134	65.0	0.23%	47.9	0.17%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-2	-4.712e+00	0.0137	136.0	0.48%	110.0	0.39%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-4.682e+00	0.0140	1494.0	5.23%	1394.7	4.92%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-4.678e+00	0.0140	1866.0	6.53%	1753.8	6.19%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-4.639e+00	0.0146	2037.0	7.13%	1919.9	6.78%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-4.617e+00	0.0148	190.0	0.66%	158.5	0.56%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-4.617e+00	0.0148	190.0	0.66%	158.5	0.56%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-4.560e+00	0.0156	38.0	0.13%	25.5	0.09%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-4.497e+00	0.0165	3332.0	11.66%	3180.9	11.23%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.475e+00	0.0168	2024.0	7.08%	1909.8	6.74%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-4.430e+00	0.0176	388.0	1.36%	342.5	1.21%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.417e+00	0.0177	794.0	2.78%	726.5	2.57%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-4.398e+00	0.0180	376.0	1.32%	331.6	1.17%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-4.370e+00	0.0185	511.0	1.79%	458.8	1.62%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-4.356e+00	0.0186	3286.0	11.50%	3138.8	11.08%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-4.355e+00	0.0186	266.0	0.93%	229.3	0.81%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-4.355e+00	0.0186	266.0	0.93%	229.3	0.81%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-1	-4.204e+00	0.0215	1719.0	6.01%	1619.0	5.72%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-4.183e+00	0.0219	54.0	0.19%	39.9	0.14%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-1	-4.055e+00	0.0247	766.0	2.68%	703.0	2.48%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.018e+00	0.0256	913.0	3.19%	844.4	2.98%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-3.955e+00	0.0272	180.0	0.63%	152.5	0.54%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-3.941e+00	0.0274	1331.0	4.66%	1247.7	4.41%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-3.935e+00	0.0275	4.0	0.01%	1.9	0.01%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.919e+00	0.0279	159.0	0.56%	133.8	0.47%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-3.888e+00	0.0286	3278.0	11.47%	3140.3	11.09%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-3.871e+00	0.0291	185.0	0.65%	157.5	0.56%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.801e+00	0.0310	926.0	3.24%	859.6	3.03%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-1	-3.770e+00	0.0319	5340.0	18.68%	5162.6	18.23%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-3.715e+00	0.0336	502.0	1.76%	455.5	1.61%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.655e+00	0.0356	895.0	3.13%	831.3	2.93%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-3.620e+00	0.0367	499.0	1.75%	453.9	1.60%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.532e+00	0.0400	266.0	0.93%	234.5	0.83%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-1	-3.497e+00	0.0412	7508.0	26.27%	7302.3	25.78%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.447e+00	0.0432	1939.0	6.78%	1845.0	6.51%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.440e+00	0.0434	938.0	3.28%	875.7	3.09%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.425e+00	0.0439	61.0	0.21%	47.0	0.17%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.404e+00	0.0447	165.0	0.58%	141.5	0.50%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-3.353e+00	0.0469	711.0	2.49%	658.3	2.32%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-3.343e+00	0.0472	55.0	0.19%	42.0	0.15%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.322e+00	0.0481	453.0	1.59%	412.8	1.46%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.283e+00	0.0498	440.0	1.54%	400.4	1.41%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.188e+00	0.0546	378.0	1.32%	342.3	1.21%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.165e+00	0.0556	1484.0	5.19%	1407.8	4.97%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.153e+00	0.0562	904.0	3.16%	846.1	2.99%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-3.119e+00	0.0579	25.0	0.09%	17.7	0.06%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.110e+00	0.0583	298.0	1.04%	267.9	0.95%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.096e+00	0.0589	636.0	2.23%	589.8	2.08%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.067e+00	0.0604	124.0	0.43%	105.9	0.37%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.050e+00	0.0613	2038.0	7.13%	1948.5	6.88%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-1	-3.043e+00	0.0615	2204.0	7.71%	2110.7	7.45%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-1	-2.986e+00	0.0649	213.0	0.75%	188.8	0.67%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.962e+00	0.0663	200.0	0.70%	176.8	0.62%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.954e+00	0.0666	339.0	1.19%	307.5	1.09%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-2.903e+00	0.0699	1099.0	3.85%	1038.0	3.67%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.870e+00	0.0720	2319.0	8.11%	2226.2	7.86%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-1	-2.808e+00	0.0763	4156.0	14.54%	4027.8	14.22%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.706e+00	0.0843	384.0	1.34%	352.9	1.25%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.648e+00	0.0891	1494.0	5.23%	1426.3	5.04%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-1	-2.631e+00	0.0903	1144.0	4.00%	1086.4	3.84%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-2.560e+00	0.0967	1406.0	4.92%	1342.4	4.74%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.456e+00	0.1070	3801.0	13.30%	3689.3	13.03%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.249e+00	0.1312	5478.0	19.17%	5346.3	18.88%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.212e+00	0.1356	2618.0	9.16%	2535.3	8.95%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.201e+00	0.1367	838.0	2.93%	796.1	2.81%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.201e+00	0.1367	268.0	0.94%	246.4	0.87%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.975e+00	0.1705	402.0	1.41%	377.6	1.33%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.951e+00	0.1740	145.0	0.51%	131.8	0.47%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.942e+00	0.1751	208.0	0.73%	191.6	0.68%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.884e+00	0.1850	631.0	2.21%	600.8	2.12%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.798e+00	0.2011	191.0	0.67%	176.7	0.62%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.778e+00	0.2045	219.0	0.77%	203.9	0.72%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.697e+00	0.2212	1235.0	4.32%	1193.4	4.21%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.546e+00	0.2564	199.0	0.70%	186.3	0.66%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.494e+00	0.2693	2525.0	8.83%	2466.6	8.71%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.449e+00	0.2811	260.0	0.91%	246.2	0.87%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.385e+00	0.2988	656.0	2.30%	633.9	2.24%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.336e+00	0.3129	2581.0	9.03%	2527.9	8.93%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.243e+00	0.3423	2629.0	9.20%	2578.7	9.10%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.199e+00	0.3566	2102.0	7.35%	2060.2	7.27%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.166e+00	0.3675	243.0	0.85%	233.5	0.82%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.116e+00	0.3852	82.0	0.29%	77.1	0.27%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.063e+00	0.4052	1378.0	4.82%	1351.4	4.77%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.046e+00	0.4111	68.0	0.24%	64.0	0.23%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.001e+00	0.4288	1237.0	4.33%	1214.4	4.29%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-9.960e-01	0.4295	1101.0	3.85%	1080.6	3.82%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-9.658e-01	0.4415	599.0	2.10%	586.0	2.07%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.331e-01	0.4549	206.0	0.72%	200.5	0.71%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.202e-01	0.4595	902.0	3.16%	886.2	3.13%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-8.761e-01	0.4789	1263.0	4.42%	1244.2	4.39%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-8.642e-01	0.4833	412.0	1.44%	404.8	1.43%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.018e-01	0.5130	133.0	0.47%	130.4	0.46%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.836e-01	0.5209	568.0	1.99%	560.2	1.98%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.469e-01	0.5389	862.0	3.02%	852.1	3.01%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.740e-01	0.5781	580.0	2.03%	576.0	2.03%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-6.090e-01	0.6152	40.0	0.14%	40.7	0.14%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.021e-01	0.6178	16.0	0.06%	16.8	0.06%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.882e-01	0.6248	843.0	2.95%	839.5	2.96%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.742e-01	0.6318	224.0	0.78%	224.6	0.79%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.718e-01	0.6318	1526.0	5.34%	1518.4	5.36%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.411e-01	0.6495	435.0	1.52%	435.3	1.54%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.363e-01	0.6510	471.0	1.65%	471.8	1.67%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.309e-01	0.6527	187.0	0.65%	188.2	0.66%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.262e-01	0.6541	82.0	0.29%	83.7	0.30%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-5.136e-01	0.6606	391.0	1.37%	392.7	1.39%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.791e-01	0.6820	433.0	1.52%	435.6	1.54%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.348e-01	0.7110	161.0	0.56%	164.5	0.58%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.204e-01	0.7193	592.0	2.07%	596.5	2.11%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.083e-01	0.7262	227.0	0.79%	231.4	0.82%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.080e-01	0.7262	1256.0	4.39%	1259.7	4.45%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.926e-01	0.7338	371.0	1.30%	377.0	1.33%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.910e-01	0.7338	3367.0	11.78%	3361.1	11.87%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.843e-01	0.7360	1078.0	3.77%	1083.1	3.82%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.645e-01	0.7488	108.0	0.38%	113.0	0.40%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.569e-01	0.7526	718.0	2.51%	725.0	2.56%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.240e-01	0.7758	277.0	0.97%	284.3	1.00%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.891e-01	0.8012	2155.0	7.54%	2165.6	7.65%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.882e-01	0.8012	344.0	1.20%	353.9	1.25%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.175e-01	0.8562	590.0	2.06%	605.8	2.14%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.117e-01	0.8590	2266.0	7.93%	2285.7	8.07%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.577e-01	0.9043	168.0	0.59%	180.6	0.64%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.544e-01	0.9050	1742.0	6.10%	1769.3	6.25%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.356e-01	0.9198	763.0	2.67%	788.0	2.78%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.099e-01	0.9414	4569.0	15.99%	4605.9	16.26%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.028e-01	0.9457	22.0	0.08%	28.9	0.10%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.510e-02	0.9602	154.0	0.54%	170.1	0.60%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-5.228e-02	0.9872	12.0	0.04%	18.9	0.07%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-5.228e-02	0.9872	12.0	0.04%	18.3	0.06%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.605e-02	0.9909	741.0	2.59%	780.2	2.75%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.584e-02	0.9909	691.0	2.42%	729.6	2.58%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-4.016e-02	0.9918	545.0	1.91%	581.9	2.05%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.961e-02	0.9918	657.0	2.30%	696.3	2.46%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.006e-02	0.9969	542.0	1.90%	581.6	2.05%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.809e-02	0.9969	60.0	0.21%	75.9	0.27%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-9.665e-03	1.0000	224.0	0.78%	258.5	0.91%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-4.052e-03	1.0000	39.0	0.14%	58.0	0.20%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.961e-03	1.0000	516.0	1.81%	578.3	2.04%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.261e-03	1.0000	363.0	1.27%	419.3	1.48%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.570e-04	1.0000	110.0	0.38%	146.3	0.52%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.570e-04	1.0000	110.0	0.38%	146.3	0.52%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	1097.0	3.84%	1332.9	4.71%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	2899.0	10.14%	3496.0	12.34%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	3647.0	12.76%	4312.2	15.23%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	1899.0	6.64%	2357.4	8.32%